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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015890980.1_cds_XP_016445680.1_40612
CDS Infomation

[gene=LOC107770857] [db_xref=GeneID:107770857] [protein=probable polygalacturonase At3g15720 isoform X3] [protein_id=XP_016445680.1] [location=complement(join(61903..62136,62226..62342,62682..62790,62883..62964,63377..63584,64370..64531,65755..65892,66226..66345,67983..68003))] [gbkey=CDS]
Sequence

ATGGTTTGTTGGCGTACTCCGGATCGAGCTTTCATCTTTTTGATCTGTATTACTCCATTT
ATTCTTGATAGAAGTCTTGCTGCTGTTTTTGATATAACAAGTTATGGCGCTGTTGGAGAT
GGAAAGCACGACGACACTCAAGCATTCAAACAAGCTTGGGCAGCTGCGTGTAGGGGTGAC
AGTAGAAATCCGTCAATGTTTATACCAAGTGGGAAGTCATTTTTAATACGACCAATTACA
TTCCAAGGACCTTGCAAATCCTCCAATATTCATCTACAAGTATCAGGATCAATTGTAGCA
CCAGAGGATCCAAAGGAATGGAAAGGTTGTGAAAATGTTAGTTGGATATATTTTACAGGT
GTTTTTGGTCTCTTCATCAATGGTTCTGGTACTATCAATGGCAATGGTCAACGTTGGTGG
AAAACTCATAGTGGTATCAGGGCTGTCCACTTTAATTATTGTAACGGCCTTCAATTGAGT
GGAATTAAGCTAGTGAATAGTTCGAGAAATCATATAAGCCTGACTTACAGCAAAGGAGTA
ACCATCTCAAAAATTCATATTAGTGCACCAAAATATAGTCGCAATACTGATGGTATTGAT
ATCTCTAACTCTAGCCAACTTCACATTCAAGACTCCACTATTCAGACAGGTGATGACTGC
ATTGCCATCAATACTGGGTGCGTTGATGTTCATATTTCTGGTATTTCATGTGGACCAGGG
CATGGTATAAGTGTGGGAAGCTTAGGTCCAGATAACACATATGCGTATGTTGACAACGTC
TATGTAACAAATTGTAACCTTGAGGGAACCCAGAATGGTGTTAGAATTAAGACATGGCAG
GGTGGTTCTGGGTATGCTAGGTCTATACATTTTGAAGATATTCACCTCAAAAATGTAGAA
AACCCCATCATTATTGATCAGTTTTATTGCAATGGAGGTCATTCATGTCAACCTCAGGTA
AGTGCAGTGAAAATAAGCGATATAACATACAAGAATATACATGGAAGTACAAGCAGCAAA
GCAGCAATAAATTTGAACTGTAGCAATAGCACAGCTTGCACCAACATTGAGATGGAGAAT
ATCAACATAACTCCAGTTGTCCCTGGACAAAAGATTTTTGCTATTTGCAATAATGCCAAA
GGAAAAGCCTCTTCAACTTCACCTCCTGTACCTTGTTTGGATAAATATTAG

Peptide Sequence

PEP ID

XP_016445680.1
PEP Infomation

PREDICTED: probable polygalacturonase At3g15720 isoform X3 [Nicotiana tabacum]
Sequence

MVCWRTPDRAFIFLICITPFILDRSLAAVFDITSYGAVGDGKHDDTQAFKQAWAAACRGD
SRNPSMFIPSGKSFLIRPITFQGPCKSSNIHLQVSGSIVAPEDPKEWKGCENVSWIYFTG
VFGLFINGSGTINGNGQRWWKTHSGIRAVHFNYCNGLQLSGIKLVNSSRNHISLTYSKGV
TISKIHISAPKYSRNTDGIDISNSSQLHIQDSTIQTGDDCIAINTGCVDVHISGISCGPG
HGISVGSLGPDNTYAYVDNVYVTNCNLEGTQNGVRIKTWQGGSGYARSIHFEDIHLKNVE
NPIIIDQFYCNGGHSCQPQVSAVKISDITYKNIHGSTSSKAAINLNCSNSTACTNIEMEN
INITPVVPGQKIFAICNNAKGKASSTSPPVPCLDKY

Transcript Sequence

Gene sequence data has not been registered.